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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0616Putative glycine/betaine/carnitine/choline ABC transporter, ATP-binding subunit. (383 aa)    
Predicted Functional Partners:
LCA_1869
Osmoprotectant transport system substrate-binding protein; Putative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits.
 0.998
LCA_0617
Putative glycine/betaine/carnitine/choline ABC transporter, membrane-spanning subunit.
 0.996
LCA_0618
Putative glycine/betaine/carnitine/choline ABC transporter, substrate-binding lipoprotein precursor.
 0.996
LCA_0619
Putative glycine/betaine/carnitine/choline ABC transporter, membrane-spanning subunit.
 0.996
LCA_1870
Putative glycine betaine/carnitine/choline ABC transporter, ATP-binding subunit.
  
  
 
0.907
oppC
Oligopeptide ABC transporter, membrane-spanning subunit.
 
      0.842
LCA_0544
Putative drug ABC exporter, ATP-binding subunit.
 
    
0.693
LCA_0271
Putative multidrug ABC exporter, ATP-binding subunit.
     
0.656
argR
Putative transcriptional regulator, ArgR family; Regulates arginine biosynthesis genes.
       0.447
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.