STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0783Putative transcriptional regulator, Fnr/Crp Family. (221 aa)    
Predicted Functional Partners:
LCA_0782
Putative Cobalt ABC transporter, membrane-spanning/permease subunit.
 
    0.976
LCA_0784
5 Proteins of unknown function that are similar to other proteins.
 
  
 0.972
LCA_0781
Putative cobalt ABC transporter, membrane-spanning/permease subunit.
 
  
 0.967
LCA_0780
Putative cobalt ABC transporter, ATP-binding subunit.
 
  
 0.900
LCA_0790
Hypothetical protein, ATP utilizing enzyme PP-loop family.
 
  
 0.891
LCA_0785
Putative NCAIR mutase, PurE-related protein.
  
  
 0.886
LCA_0786
5 Proteins of unknown function that are similar to other proteins.
  
  
 0.878
LCA_0788
Putative facilitator protein, MIP family; Belongs to the MIP/aquaporin (TC 1.A.8) family.
 
 
 0.820
LCA_0787
5 Proteins of unknown function that are similar to other proteins.
  
    0.716
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.541
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.