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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_08045 Proteins of unknown function that are similar to other proteins. (219 aa)    
Predicted Functional Partners:
recD
Exodeoxyribonuclease V, alpha subunit; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.814
gpm4
Phosphoglycerate mutase.
       0.789
LCA_0806
Putative N-acetyl transferase, GNAT family.
       0.686
LCA_1550
Hypothetical lipoprotein precursor.
  
     0.664
LCA_0080
5 Proteins of unknown function that are similar to other proteins.
  
     0.604
LCA_1299
Putative adenine-specific DNA methyltransferase.
  
     0.572
LCA_1014
5 Proteins of unknown function that are similar to other proteins.
  
     0.550
nox
NADH oxidase.
       0.535
LCA_0519
5 Proteins of unknown function that are similar to other proteins.
 
   
 0.507
LCA_0404
5 Proteins of unknown function that are similar to other proteins.
  
     0.505
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.