Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LCA_0806Putative N-acetyl transferase, GNAT family. (403 aa)    
Predicted Functional Partners:
LCA_1481
5 Proteins of unknown function that are similar to other proteins.
     0.816
recD
Exodeoxyribonuclease V, alpha subunit; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily.
       0.692
LCA_0804
5 Proteins of unknown function that are similar to other proteins.
       0.686
gpm4
Phosphoglycerate mutase.
       0.673
LCA_1537
Hypothetical extracellular protein precursor.
  
     0.529
nox
NADH oxidase.
       0.480
LCA_1521
Putative transcriptional regulator, TetR family.
  
     0.465
LCA_0525
Hypothetical integral membrane protein.
  
     0.424
LCA_1261
Putative autotransport protein.
  
     0.401
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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