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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0835Putative DNA-binding protein, XRE family. (284 aa)    
Predicted Functional Partners:
LCA_1119
5 Proteins of unknown function that are similar to other proteins.
  
     0.706
LCA_1368
5 Proteins of unknown function that are similar to other proteins.
  
     0.561
LCA_0833
Putative hydrolase, haloacid dehalogenase family.
  
    0.543
LCA_1541
Putative extracellular lipase/esterase precursor.
  
     0.533
LCA_0832
5 Proteins of unknown function that are similar to other proteins.
       0.525
LCA_1412
Putative lipase/esterase.
  
     0.511
LCA_1003
5 Proteins of unknown function that are similar to other proteins.
  
     0.476
LCA_1782
Putative ferritin-like DNA-binding protein (oxidative damage protectant) (dps-type); Belongs to the Dps family.
  
   
 0.476
LCA_0939
Putative transcriptional regulator, MarR family.
  
 
   0.463
LCA_1542
Putative phosphotransferase system, enzyme IIC (C-terminal fragment), authentic frameshift.
  
     0.461
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.