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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0872Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation. (280 aa)    
Predicted Functional Partners:
rpsU
30S ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
     
 0.736
LCA_1142
Hypothetical protein with CBS domain.
 
  
 0.702
LCA_0874
5 Proteins of unknown function that are similar to other proteins.
       0.637
ppdK
Pyruvate phosphate dikinase.
 
  
 0.551
glyS
Glycyl-tRNA synthetase, beta subunit.
  
    0.447
LCA_0470
5 Proteins of unknown function that are similar to other proteins.
   
    0.433
phoH
Phosphate starvation-inducible protein, PhoH.
       0.402
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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