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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0927Hypothetical integral membrane protein. (251 aa)    
Predicted Functional Partners:
LCA_0928
6 Protein of unknown function, without similarity to other proteins.
     
 0.817
LCA_0249
5 Proteins of unknown function that are similar to other proteins.
  
     0.755
LCA_1806
6 Protein of unknown function, without similarity to other proteins.
  
     0.678
LCA_1324
Putative DNA-binding protein, XRE family.
  
     0.616
LCA_0167
6 Protein of unknown function, without similarity to other proteins.
  
     0.560
LCA_0248
5 Proteins of unknown function that are similar to other proteins.
  
     0.547
LCA_1716
5 Proteins of unknown function that are similar to other proteins.
  
     0.533
LCA_1468
5 Proteins of unknown function that are similar to other proteins.
  
     0.481
LCA_0534
Hypothetical cell surface protein precursor (with LPQTG sorting signal).
  
     0.460
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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