close STRING v12.5 is now available!
The next version of STRING is ready for use in your analyses: updated networks across STRING • newly available directed regulatory networks • a new typed view showing functional, physical, and regulatory edges in one network • new clustering options and cluster-based layouts • … and much more!
Explore STRING v12.5 →
STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_0997Hypothetical extracellular protein precursor. (209 aa)    
Predicted Functional Partners:
LCA_0998
Putative extracellular lysophospholipase precursor.
 
  
 0.977
LCA_0996
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0346 family.
 
   
 0.935
sipA2
Signal peptidase I (Leader peptidase I); Belongs to the peptidase S26 family.
       0.785
LCA_0999
Hypothetical protein, DegV family.
  
  
 0.746
LCA_0994
Putative GTP-binding protein; Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity; Belongs to the TRAFAC class YlqF/YawG GTPase family. MTG1 subfamily.
       0.732
rnhB
Ribonuclease HII (RNase HII); Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
       0.727
LCA_0992
Putative DNA processing protein, DprA/SMF family.
       0.709
LCA_1632
5 Proteins of unknown function that are similar to other proteins.
  
     0.684
LCA_1014
5 Proteins of unknown function that are similar to other proteins.
 
     0.643
LCA_1021
5 Proteins of unknown function that are similar to other proteins.
  
     0.640
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.