STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1069Putative bacterial type II secretion/competence system, protein ComEC-like. (755 aa)    
Predicted Functional Partners:
LCA_1070
Putative bacterial type II secretion/competence system, DCMP deaminase ComEB-like.
  
 0.950
LCA_1071
Putative bacterial type II secretion/competence system, protein ComEA-like.
 
  
 0.932
holA
DNA-directed DNA polymerase III, delta subunit.
 
   
 0.877
LCA_0493
Putative bacterial type II secretion/competence system, protein ComFC-like.
 
  
 0.760
LCA_0992
Putative DNA processing protein, DprA/SMF family.
  
  
 0.746
LCA_0492
Putative bacterial type II secretion/competence system, ATP-dependent DNA helicase ComFA-like.
  
  
 0.721
LCA_1305
Putative Bacterial type II secretion/competence system, protein comGB-like.
 
  
 0.716
LCA_1306
Putative bacterial type II secretion/competence system, protein ComGA-like.
 
  
 0.716
LCA_1072
Hypothetical lipoprotein precursor.
       0.701
kdtB
Phosphopantetheine adenylyltransferase (Pantetheine-phosphate adenylyltransferase); Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.701
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.