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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1080Myo-inositol monophosphatase. (265 aa)    
Predicted Functional Partners:
LCA_1081
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0223 family.
 
  
 0.911
LCA_1079
GTP-binding protein TypA (stress response GTPase).
  
  
 0.758
LCA_0690
Putative rRNA methytransferase (sun protein); Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
  
 
 0.709
nusA
Transcription elongation protein NusA (Transcription termination-antitermination factor NusA); Participates in both transcription termination and antitermination.
   
   0.698
rpoZ
DNA-directed RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits.
  
   0.673
rpoC
DNA-directed RNA polymerase, beta prime subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.664
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
   0.664
nusG
Transcription antitermination protein NusG; Participates in transcription elongation, termination and antitermination.
   
 
 0.641
pdhC
Puruvate dehydrogenase complex, E2 component, dihydrolipoamide acetyltransferase.
  
  
 0.606
pdhD
Pyruvate dehydrogenase complex, E3 component, dihydrolipoamide dehydrogenase.
  
  
 0.588
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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