STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1111Putative cysteine desulfurase (Class-V aminotransferase, putative SufS protein homologue); Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. (412 aa)    
Predicted Functional Partners:
LCA_1110
Putative NifU-homolog involved in Fe-S cluster assembly.
 
 
 0.999
LCA_1109
Putative ABC-type system involved in Fe-S cluster assembly (sufB homolog).
 
 0.998
LCA_1113
Putative ABC-type ATP-binding protein involved in Fe-S cluster assembly (SufC homolog).
  
 0.998
LCA_1112
Putative ABC-type system involved in Fe-S cluster assembly (SufB homolog).
 
 0.992
trxB2
Thioredoxin reductase.
  
 
 0.913
LCA_0900
5 Proteins of unknown function that are similar to other proteins.
 
  
 0.644
LCA_0791
Putative cysteine desulfurase (aminotransferase, class V).
    
0.588
LCA_1114
Putative methionine ABC transporter, substrate binding lipoprotein precursor; Belongs to the nlpA lipoprotein family.
       0.531
metN
Putative methionine ABC transporter, ATP-binding subunit; Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
      0.531
LCA_1115
Putative methionine ABC transporter, membrane-spanning subunit.
       0.530
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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