Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1121Hypothetical extracellular peptide precursor. (60 aa)    
Predicted Functional Partners:
LCA_1120
Hypothetical protein; Could be involved in insertion of integral membrane proteins into the membrane; Belongs to the UPF0161 family.
       0.798
mbl
Cell shape determining protein, MerB family.
     
 0.791
LCA_1119
5 Proteins of unknown function that are similar to other proteins.
       0.773
LCA_0902
6 Protein of unknown function, without similarity to other proteins.
  
     0.767
LCA_0040
5 Proteins of unknown function that are similar to other proteins.
  
     0.752
LCA_1661
Putative nucleotide hydrolase, NUDIX family.
  
   
 0.710
LCA_0736
Hypothetical integral membrane protein.
  
     0.708
LCA_1804
5.1 Protein of unknown function only similar toother proteins from the same organism.
  
     0.706
LCA_1124
5 Proteins of unknown function that are similar to other proteins.
 
     0.692
pbp1B
Bifunctional glycosyltransferase/transpeptidase penicillin-binding protein 1B.
  
     0.670
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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