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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_11545 Proteins of unknown function that are similar to other proteins. (106 aa)    
Predicted Functional Partners:
LCA_1153
Hypothetical protein, CAAX protease family.
       0.774
LCA_1155
Hypothetical integral membrane protein.
       0.773
LCA_1536
5 Proteins of unknown function that are similar to other proteins.
  
    0.691
LCA_1090
5 Proteins of unknown function that are similar to other proteins.
  
     0.640
LCA_0407
Putative phosphoesterase.
  
     0.507
csp2
Similar to cold shock protein, CspA family.
       0.504
LCA_1309
5 Proteins of unknown function that are similar to other proteins.
  
     0.489
LCA_1327
Hypothetical extracellular peptide precursor.
  
     0.468
ftsL
Putative cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
     0.465
LCA_1509
5 Proteins of unknown function that are similar to other proteins; Belongs to the sigma-70 factor family.
  
     0.462
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.