STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1246Putative glycosyl transferase, family 2. (439 aa)    
Predicted Functional Partners:
LCA_0829
Hypothetical integral membrane protein.
  
 
 0.958
LCA_1064
5 Proteins of unknown function that are similar to other proteins.
  
 
 0.801
LCA_1812
Putative surface polysaccharide deacetylase.
  
  
 0.779
LCA_1243
6 Protein of unknown function, without similarity to other proteins.
       0.774
LCA_1245
6 Protein of unknown function, without similarity to other proteins.
       0.774
LCA_1244
6 Protein of unknown function, without similarity to other proteins.
       0.773
fruA
Fructose-specific phosphotransferase system, enzyme IIABC.
     
 0.677
infB
Translation initiation factor IF-2; One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex; Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. IF-2 subfamily.
       0.635
polA
DNA-directed DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
  
  
 0.602
LCA_1241
Bifunctional enzyme, riboflavin kinase and FMN adenylyltransferase; Belongs to the ribF family.
       0.546
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.