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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_12745 Proteins of unknown function that are similar to other proteins. (80 aa)    
Predicted Functional Partners:
LCA_1273
Hypothetical small extracellular protein precursor.
 
    0.798
lexA
Transcriptional repressor LexA; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair.
  
  
 0.787
LCA_1271
Putative multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits.
       0.449
LCA_1272
Putative multidrug ABC exporter, ATP-binding and membranespanning/permease subunits.
       0.449
LCA_1249
Putative 50S ribosomal protein, L7A family.
  
     0.444
LCA_1269
Putative extracellular hydrolase precursor (Lipase/esterase).
 
     0.436
LCA_1081
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0223 family.
  
     0.429
LCA_0003
5 Proteins of unknown function that are similar to other proteins.
  
     0.421
LCA_0433
Hypothetical integral membrane protein.
  
     0.421
LCA_1270
Hypothetical small peptide.
       0.417
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.