STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_13305 Proteins of unknown function that are similar to other proteins. (77 aa)    
Predicted Functional Partners:
LCA_1331
Hypothetical integral membrane protein.
 
     0.870
glk
Glucokinase.
  
    0.863
LCA_1328
Putative Rhodanese-sulfurtransferase.
       0.856
fthC
5-formyltetrahydrofolate cyclo-ligase; Belongs to the 5-formyltetrahydrofolate cyclo-ligase family.
       0.821
rpmG1
50S ribosomal protein L33; Belongs to the bacterial ribosomal protein bL33 family.
       0.812
LCA_0996
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0346 family.
  
     0.679
pbp2B2
Bifuntional dimerisation/transpeptidase penicillin-binding protein 2B.
       0.674
LCA_1091
5 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0356 family.
  
    0.616
rpsK
30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family.
  
    0.541
LCA_0841
5 Proteins of unknown function that are similar to other proteins.
 
    0.519
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.