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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1409Hypothetical cell surface protein precursor. (353 aa)    
Predicted Functional Partners:
ftsX
Cell-division associated ABC transporter, membrane FtsX subunit; Part of the ABC transporter FtsEX involved in asymmetric cellular division facilitating the initiation of sporulation. Belongs to the ABC-4 integral membrane protein family. FtsX subfamily.
 
  
 0.700
LCA_1076
Hypothetical extracellular protein precursor.
 
    0.636
LCA_0106
Hypothetical cell surface protein precursor.
 
  
 0.632
ftsE
Cell-division associated ABC transporter, ATP binding FtsE subunit; Part of the ABC transporter FtsEX involved in cellular division.
 
  
 0.608
metS
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.525
LCA_1437
N-acetylmuramoyl-L-alanine amidase precursor (cell wall hydrolase) (Autolysin).
 
  
 0.499
LCA_1788
Putative phage-related 1,4-beta-N-acetyl muramidase (cell wall hydrolase).
   
  
 0.490
LCA_0692
Putative serine/threonine protein kinase.
 
   
 0.470
LCA_0242
Hypothetical extracellular protein precursor.
  
  
0.459
LCA_0647
Hypothetical extracellular protein precursor.
  
  
 0.459
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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