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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_14755 Proteins of unknown function that are similar to other proteins; Belongs to the UPF0374 family. (178 aa)    
Predicted Functional Partners:
recX
Putative regulatory protein, RecX family; Modulates RecA activity; Belongs to the RecX family.
      0.915
LCA_1476
Putative A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
      0.866
LCA_1273
Hypothetical small extracellular protein precursor.
 
    0.664
cysS
Cysteinyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
      0.637
LCA_1478
6 Protein of unknown function, without similarity to other proteins.
       0.574
LCA_0437
Hypothetical protein with an RNA-binding domain.
  
    0.540
mltG
Hypothetical protein; Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation. Belongs to the transglycosylase MltG family.
  
     0.537
LCA_1386
5 Proteins of unknown function that are similar to other proteins.
  
     0.533
LCA_1036
Hypothetical lipoprotein precursor.
  
     0.458
LCA_1479
Putative RNA methyltransferase, TrmA family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.449
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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