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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1512Putative polysaccharide biosynthesis protein, chain length determination. (246 aa)    
Predicted Functional Partners:
LCA_1511
Putative polysaccharide biosynthesis protein, chain length determination.
 
 0.997
CAI55817.1
Putative priming glycosyl transferase.
 
  
 0.971
CAI55815.1
Putative glycosyl transferase, group 1.
 
  
 0.780
LCA_1513
Putative transcriptional regulator (involved in exocellular polysaccharide biosynthesis).
  
  
 0.715
CAI55814.1
Putative Glycosyl transferase, family 2.
  
  
 0.637
CAI55812.1
6 Protein of unknown function, without similarity to other proteins.
  
    0.629
CAI55816.1
Putative glycosyl transferase, family 8.
       0.614
CAI55811.1
Putative teichoic acid/polysaccharide export protein.
       0.609
CAI55813.1
Hypothetical protein with a signal peptidase II-like domain.
       0.570
LCA_1575
Putative teichoic acid/polysaccharide export protein.
 
  
 0.467
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.