STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gtcA1Teichoic acid glycosylation protein. (160 aa)    
Predicted Functional Partners:
LCA_1519
Putative teichoic acid/polysaccharide glycosyl transferase, family 2.
 
  
 0.851
gtcA2
Teichoic acid glycosylation protein.
 
    
0.791
LCA_1516
Flavodoxin.
       0.678
ftsL
Putative cell division protein FtsL; Essential cell division protein; Belongs to the FtsL family.
  
     0.491
LCA_1673
Putative lipase/esterase precursor.
  
     0.470
pepM
Methionyl aminopeptidase M; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.434
LCA_0630
Putative drug ABC exporter, membrane-spanning/permease subunit.
  
     0.425
LCA_0079
5 Proteins of unknown function that are similar to other proteins.
  
     0.423
LCA_1335
Hypothetical membrane protein.
 
  
 0.408
LCA_1331
Hypothetical integral membrane protein.
  
     0.405
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.