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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1639Putative transcriptional regulator with a sugarisomerase domain, RpiR family. (276 aa)    
Predicted Functional Partners:
nanE
N-acylglucosamine-6-phosphate 2-epimerase (N-acetylmannosamine-6-phosphate 2-epimerase); Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.847
LCA_1642
Putative Solute:Na(+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
 
     0.756
nanA
N-acetylneuraminate lyase.
 
   
 0.755
LCA_1644
5 Proteins of unknown function that are similar to other proteins.
 
     0.736
nagE
N-acetylglucosamine and glucose-specific phosphotransferase system, enzyme IIABC.
  
  
 0.630
LCA_1198
Putative trehalose and glucose-specific phosphotransferase system, enzyme EIIA.
  
  
 0.630
LCA_1200
Putative trehalose and glucose-specific phosphotransferase system, enzyme IIBC.
  
  
 0.630
scrA
Sucrose-specific phosphotransferase system, enzyme IIBCA.
  
  
 0.630
fruA
Fructose-specific phosphotransferase system, enzyme IIABC.
     
 0.588
LCA_1643
Putative sugar kinase, ROK family.
 
  
 0.477
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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