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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1642Putative Solute:Na(+) symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family. (500 aa)    
Predicted Functional Partners:
LCA_1644
5 Proteins of unknown function that are similar to other proteins.
 
     0.911
LCA_1147
5 Proteins of unknown function that are similar to other proteins.
      0.881
nanE
N-acylglucosamine-6-phosphate 2-epimerase (N-acetylmannosamine-6-phosphate 2-epimerase); Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N- acetylglucosamine-6-phosphate (GlcNAc-6-P).
 
   
 0.849
LCA_1643
Putative sugar kinase, ROK family.
 
   
 0.814
LCA_1645
Putative Na(+)/(+) antiporter.
 
   
 0.794
adhE
Bifunctional enzyme: alcohol dehydrogenase, acetaldehyde dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.788
nanA
N-acetylneuraminate lyase.
 
  
 0.764
LCA_1639
Putative transcriptional regulator with a sugarisomerase domain, RpiR family.
 
     0.756
LCA_1057
Putative amino acid ABC transporter, substrate binding/permease subunit.
  
 
 0.568
LCA_1497
Putative glutamine/glutamate ABC transporter, membrane-spanning/substrate-binding subunit precursor.
  
 
 0.568
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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