Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LCA_16635 Proteins of unknown function that are similar to other proteins. (320 aa)    
Predicted Functional Partners:
LCA_1662
5 Proteins of unknown function that are similar to other proteins.
       0.741
LCA_0428
5 Proteins of unknown function that are similar to other proteins.
  
     0.732
LCA_1659
5 Proteins of unknown function that are similar to other proteins.
 
     0.732
LCA_1090
5 Proteins of unknown function that are similar to other proteins.
  
     0.718
LCA_1661
Putative nucleotide hydrolase, NUDIX family.
 
     0.717
LCA_0111
5 Proteins of unknown function that are similar to other proteins.
  
     0.715
LCA_0110
Hypothetical cell surface protein precursor.
  
     0.701
metS
Methionyl-tRNA synthetase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation; Belongs to the class-I aminoacyl-tRNA synthetase family. MetG type 2B subfamily.
       0.677
LCA_1536
5 Proteins of unknown function that are similar to other proteins.
  
     0.674
LCA_1019
Hypothetical cell surface protein precursor.
  
     0.631
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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