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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1692Putative transcriptional regulator, GntR family. (238 aa)    
Predicted Functional Partners:
LCA_1691
5 Proteins of unknown function that are similar to other proteins.
 
     0.868
LCA_1689
Putative peptidase M20 family.
     0.860
asnA2
L-asparaginase.
 
     0.816
LCA_1690
Putative cellobiose-specific phosphotransferasesystem, enzyme IIC; The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS), a major carbohydrate active -transport system, catalyzes the phosphorylation of incoming sugar substrates concomitant with their translocation across the cell membrane.
 
    0.791
LCA_1694
Putative glycine/betaine/carnitine ABC transporter, substrate binding lipoprotein precursor.
       0.550
LCA_1695
Putative glycine/betaine/carnitine ABC transporter, membrane-spanning subunit.
  
    0.550
LCA_1696
Putative glycine/betaine/carnitine ABC transporter, ATP-binding subunit.
       0.545
nagE
N-acetylglucosamine and glucose-specific phosphotransferase system, enzyme IIABC.
  
  
 0.538
LCA_1198
Putative trehalose and glucose-specific phosphotransferase system, enzyme EIIA.
  
  
 0.538
LCA_1200
Putative trehalose and glucose-specific phosphotransferase system, enzyme IIBC.
  
  
 0.538
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.