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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1696Putative glycine/betaine/carnitine ABC transporter, ATP-binding subunit. (399 aa)    
Predicted Functional Partners:
LCA_1694
Putative glycine/betaine/carnitine ABC transporter, substrate binding lipoprotein precursor.
 
 0.999
LCA_1695
Putative glycine/betaine/carnitine ABC transporter, membrane-spanning subunit.
 0.999
LCA_0271
Putative multidrug ABC exporter, ATP-binding subunit.
 
     
0.898
LCA_1088
Putative multidrug ABC exporter, ATP-binding and membrane-spanning/permease subunits.
 
     
0.881
LCA_1272
Putative multidrug ABC exporter, ATP-binding and membranespanning/permease subunits.
 
     
0.871
oppC
Oligopeptide ABC transporter, membrane-spanning subunit.
 
      0.806
LCA_0858
Putative amino acid ABC transporter, membrane-spanning subunit.
 
    
 0.595
asnA2
L-asparaginase.
      0.564
LCA_1692
Putative transcriptional regulator, GntR family.
       0.545
LCA_1691
5 Proteins of unknown function that are similar to other proteins.
       0.529
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.