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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1802Putative drug ABC exporter, ATP-binding subunit. (289 aa)    
Predicted Functional Partners:
LCA_0544
Putative drug ABC exporter, ATP-binding subunit.
    
0.778
LCA_1801
Putative drug ABC exporter, membrane-spanning subunit.
       0.765
LCA_0212
Hypothetical cell surface protein precursor.
  
     0.646
serS
Seryl-tRNA synthetase; Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L- seryl-tRNA(Sec), which will be further converted into selenocysteinyl- tRNA(Sec).
 
     0.633
LCA_1804
5.1 Protein of unknown function only similar toother proteins from the same organism.
       0.530
LCA_1800
Putative autotransport protein.
       0.498
LCA_0629
Putative drug ABC exporter, ATP-binding subunit.
    
0.463
LCA_0052
Putative Na(+) ABC exporter, membrane-spanning/permease subunit.
 
  
 0.428
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.