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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LCA_1836Putative metal ion ABC transporter, membrane-spanning subunit. (231 aa)    
Predicted Functional Partners:
LCA_1837
Putative metal ion ABC transporter, ATP-binding subunit.
  
 0.995
LCA_1838
Putative metal ion ABC transporter, membrane-spanning subunit.
 
 
 0.976
LCA_1839
Putative metal ion ABC transporter, substrate-binding lipoprotein precursor.
 
     0.951
LCA_1840
Hypothetical cell surface protein precursor (with LPQTG sorting signal).
 
     0.949
LCA_0780
Putative cobalt ABC transporter, ATP-binding subunit.
  
 
 0.686
ecfA1
Putative cobalt ABC transporter, ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.671
ecfA2
Putative cobalt ABC transporter, ATP-binding subunit; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.581
LCA_1841
Putative ABC transporter, membrane-spanning/permease subunit.
       0.499
LCA_1842
Putative ABC transporter, ATP-binding subunit.
       0.475
ecfT
Putative cobalt ABC transporter, membrane-spanning subunit; Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
  
 
 0.474
Your Current Organism:
Lactobacillus sakei
NCBI taxonomy Id: 314315
Other names: L. sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei 23K, Lactobacillus sakei subsp. sakei str. 23K, Lactobacillus sakei subsp. sakei strain 23K
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