STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KON47176.1Fis family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (465 aa)    
Predicted Functional Partners:
KON47177.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 0.950
KON48291.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.871
KON47545.1
DNA-directed RNA polymerase subunit N; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.820
KON46503.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.812
KON48429.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.811
KON48361.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.811
KON46495.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.807
KON47742.1
Transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.804
KON47657.1
Two-component response regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.798
KON46852.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.798
Your Current Organism:
Mariprofundus ferrooxydans
NCBI taxonomy Id: 314344
Other names: DSM 23021, M. ferrooxydans, Mariprofundus ferrooxydans Emerson et al. 2010, Siderooxidans marinum, strain PV-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.