Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
KON46979.1Pilus assembly protein PilC; Derived by automated computational analysis using gene prediction method: Protein Homology. (397 aa)    
Predicted Functional Partners:
KON46978.1
Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.990
KON46982.1
Methyltransferase; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.964
KON47745.1
Pilus assembly protein PilB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.958
KON47279.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.958
KON48443.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.957
KON48304.1
Pilus assembly protein PilM; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.925
KON48301.1
Pilus assembly protein PilQ; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.917
KON48302.1
Pilus assembly protein PilO; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.853
KON48747.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.852
KON48602.1
Twitching motility protein PilT; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.851
Your Current Organism:
Mariprofundus ferrooxydans
NCBI taxonomy Id: 314344
Other names: DSM 23021, M. ferrooxydans, Mariprofundus ferrooxydans Emerson et al. 2010, Siderooxidans marinum, strain PV-1
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