STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_110Hypothetical protein. (351 aa)    
Predicted Functional Partners:
KB13_1141
Hypothetical protein.
       0.773
KB13_128
Fimbrial assembly protein.
       0.773
pilB
Type II Secretion System PilB; [NU] COG0630 Type IV secretory pathway, VirB11 components, and related ATPases involved in archaeal flagella biosynthesis.
       0.773
pilC
Type II Secretion System PilC; [NU] COG1459 Type II secretory pathway, component PulF.
       0.773
KB13_981
Hypothetical protein.
       0.773
KB13_1175
Bacterial type II and III secretion system protein; [U] COG4796 Type II secretory pathway, component HofQ; Belongs to the bacterial secretin family.
       0.762
pilT
Type II Secretion PilT; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.709
KB13_387
STAS domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.681
KB13_343
Prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG4969 Tfp pilus assembly protein, major pilin PilA.
       0.658
KB13_1253
Stage II sporulation protein E; [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
       0.528
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.