rpsT protein (beta proteobacterium KB13) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

rpsT

Ribosomal protein S20; Binds directly to 16S ribosomal RNA. (86 aa)

Predicted Functional Partners:

KB13_195

0.990

rplU

0.990

rplM

0.990

rpmF

0.990

rpsU

0.988

rpsI

0.985

rpsP

0.985

rpmE

0.985

rpsO

0.985

rpsJ

0.983

Your Current Organism:

beta proteobacterium KB13

NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KB13_195	rplM	KB13_195	KB13_552	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.988
KB13_195	rplU	KB13_195	KB13_435	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.990
KB13_195	rpmE	KB13_195	KB13_581	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	Ribosomal protein L31; Binds the 23S rRNA.	0.981
KB13_195	rpmF	KB13_195	KB13_73	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	[J] COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.991
KB13_195	rpsI	KB13_195	KB13_1266	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.982
KB13_195	rpsJ	KB13_195	KB13_1098	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.979
KB13_195	rpsO	KB13_195	KB13_841	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.985
KB13_195	rpsP	KB13_195	KB13_398	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	[J] COG2058 Ribosomal protein L12E/L44/L45/RPP1/RPP2; Belongs to the bacterial ribosomal protein bS16 family.	0.981
KB13_195	rpsT	KB13_195	KB13_1122	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.990
KB13_195	rpsU	KB13_195	KB13_686	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	[J] COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.984
rplM	KB13_195	KB13_552	KB13_195	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Conserved hypothetical protein; [J] COG0227 Ribosomal protein L28.	0.988
rplM	rplU	KB13_552	KB13_435	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.991
rplM	rpmE	KB13_552	KB13_581	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein L31; Binds the 23S rRNA.	0.972
rplM	rpmF	KB13_552	KB13_73	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	[J] COG0333 Ribosomal protein L32; Belongs to the bacterial ribosomal protein bL32 family.	0.987
rplM	rpsI	KB13_552	KB13_1266	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	[J] COG0103 Ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.999
rplM	rpsJ	KB13_552	KB13_1098	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S10; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family.	0.992
rplM	rpsO	KB13_552	KB13_841	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.986
rplM	rpsP	KB13_552	KB13_398	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	[J] COG2058 Ribosomal protein L12E/L44/L45/RPP1/RPP2; Belongs to the bacterial ribosomal protein bS16 family.	0.989
rplM	rpsT	KB13_552	KB13_1122	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	Ribosomal protein S20; Binds directly to 16S ribosomal RNA.	0.990
rplM	rpsU	KB13_552	KB13_686	Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	[J] COG0828 Ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.	0.979