STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_1201D,D-heptose 1,7-bisphosphate phosphatase; [E] COG0241 Histidinol phosphatase and related phosphatases. (179 aa)    
Predicted Functional Partners:
gmhA
[G] COG0279 Phosphoheptose isomerase.
 
 0.994
rfaF
Lipopolysaccharide heptosyltransferase II; [M] COG0859 ADP-heptose:LPS heptosyltransferase.
  
 0.968
hldE
Bifunctional protein HldE; Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno-heptose. In the N-terminal section; belongs to the carbohydrate kinase PfkB family.
  
 0.955
galE
UDP-glucose 4-epimerase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
    
 0.889
KB13_770
Ghmp kinase; [I] COG1577 Mevalonate kinase.
 
 0.869
KB13_1242
Mannose-1-phosphate guanyltransferase, putative; [M] COG1209 dTDP-glucose pyrophosphorylase.
 
 
  0.819
KB13_1181
Conserved hypothetical protein; [R] COG1451 Predicted metal-dependent hydrolase.
   
   0.812
KB13_735
[I] COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase.
  
    0.794
glyS
[J] COG0751 Glycyl-tRNA synthetase, beta subunit.
  
    0.793
glyQ
[J] COG0752 Glycyl-tRNA synthetase, alpha subunit.
       0.792
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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