STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_1232Cytochrome c assembly protein; [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component. (364 aa)    
Predicted Functional Partners:
KB13_1249
[O] COG1333 ResB protein required for cytochrome c biosynthesis.
 
  
 0.990
KB13_176
ABC transporter ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component.
    
  0.660
KB13_1068
[Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
  
    0.638
KB13_1084
ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
       0.634
KB13_919
Redoxin superfamily protein; [OC] COG0526 Thiol-disulfide isomerase and thioredoxins.
 
  
 0.619
KB13_187
ABC transporter, periplasmic substrate-binding protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
       0.617
ttg2D
Toluene tolerance protein Ttg2D; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
       0.617
KB13_91
Hypothetical protein.
       0.617
KB13_777
Oxidoreductase, FAD-binding; [C] COG0247 Fe-S oxidoreductase.
 
     0.609
KB13_1092
ABC-2; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
       0.596
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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