STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_1249[O] COG1333 ResB protein required for cytochrome c biosynthesis. (610 aa)    
Predicted Functional Partners:
KB13_1232
Cytochrome c assembly protein; [O] COG0755 ABC-type transport system involved in cytochrome c biogenesis, permease component.
 
  
 0.990
KB13_987
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.675
KB13_777
Oxidoreductase, FAD-binding; [C] COG0247 Fe-S oxidoreductase.
  
     0.669
KB13_1068
[Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
       0.634
KB13_1084
ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
       0.634
KB13_187
ABC transporter, periplasmic substrate-binding protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
       0.617
ttg2D
Toluene tolerance protein Ttg2D; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
       0.617
KB13_91
Hypothetical protein.
       0.617
KB13_1092
ABC-2; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
       0.596
KB13_133
[O] COG0695 Glutaredoxin and related proteins; Belongs to the glutaredoxin family. Monothiol subfamily.
       0.596
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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