| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| KB13_157 | ybeY | KB13_157 | KB13_153 | Hypothetical protein; [R] COG0517 FOG: CBS domain; CBS. | Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.927 |
| KB13_690 | rplC | KB13_690 | KB13_834 | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.995 |
| KB13_690 | rplM | KB13_690 | KB13_552 | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.992 |
| KB13_690 | rplO | KB13_690 | KB13_1052 | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.997 |
| KB13_690 | rplU | KB13_690 | KB13_435 | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.988 |
| KB13_690 | rplX | KB13_690 | KB13_1042 | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.993 |
| KB13_690 | rpsQ | KB13_690 | KB13_188 | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.994 |
| KB13_690 | ybeY | KB13_690 | KB13_153 | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.779 |
| era | ybeY | KB13_918 | KB13_153 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.773 |
| miaB | ybeY | KB13_9 | KB13_153 | tRNA-i(6)A37 thiotransferase enzyme MiaB; Catalyzes the methylthiolation of N6-(dimethylallyl)adenosine (i(6)A), leading to the formation of 2-methylthio-N6- (dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine. | Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.694 |
| rplC | KB13_690 | KB13_834 | KB13_690 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | 0.995 |
| rplC | rplM | KB13_834 | KB13_552 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 0.997 |
| rplC | rplO | KB13_834 | KB13_1052 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.998 |
| rplC | rplU | KB13_834 | KB13_435 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.992 |
| rplC | rplX | KB13_834 | KB13_1042 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein L24; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.996 |
| rplC | rpsQ | KB13_834 | KB13_188 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.998 |
| rplC | ybeY | KB13_834 | KB13_153 | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | Conserved hypothetical protein TIGR00043; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.678 |
| rplM | KB13_690 | KB13_552 | KB13_690 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | 50S ribosomal protein L17; [J] COG0532 Translation initiation factor 2 (IF-2; GTPase); Belongs to the bacterial ribosomal protein bL17 family. | 0.992 |
| rplM | rplC | KB13_552 | KB13_834 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L3; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit. | 0.997 |
| rplM | rplO | KB13_552 | KB13_1052 | Ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly. | Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family. | 0.998 |
