STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_176ABC transporter ATP-binding protein; [V] COG1131 ABC-type multidrug transport system, ATPase component. (303 aa)    
Predicted Functional Partners:
KB13_1092
ABC-2; [GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
 
 0.982
dppD
[R] COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase; Belongs to the ABC transporter superfamily.
 
     
0.899
KB13_1259
[V] COG0842 ABC-type multidrug transport system, permease component.
  
 0.885
msbA
Lipid A export permease/ATP-binding protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
 
 
 
0.842
KB13_187
ABC transporter, periplasmic substrate-binding protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
    
  0.804
KB13_1084
ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
 
  
 
0.802
KB13_489
BolA-like protein; [T] COG0271 Stress-induced morphogen (activity unknown); Belongs to the BolA/IbaG family.
       0.792
murA
UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine; Belongs to the EPSP synthase family. MurA subfamily.
       0.787
ttg2D
Toluene tolerance protein Ttg2D; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
  
 
  0.785
KB13_1068
[Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
    
 0.779
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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