STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KB13_23VacJ family lipoprotein; [M] COG2853 Surface lipoprotein. (257 aa)    
Predicted Functional Partners:
ttg2D
Toluene tolerance protein Ttg2D; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
 
 
 
 0.938
KB13_187
ABC transporter, periplasmic substrate-binding protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
 
   
 0.857
KB13_263
Conserved hypothetical protein; [M] COG3203 Outer membrane protein (porin).
    
   0.798
KB13_1068
[Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
 
   
 0.671
phrB_1
[L] COG0415 Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
       0.559
KB13_1084
ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
 
   
 0.410
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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