STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_249Lipocalin family protein; Involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Displays a binding preference for lysophospholipids. (172 aa)    
Predicted Functional Partners:
KB13_699
Amine oxidase; [R] COG2907 Predicted NAD/FAD-binding protein.
 
     0.822
KB13_741
Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase; [I] COG1398 Fatty-acid desaturase.
       0.782
KB13_165
Proton/peptide symporter family protein; [GEPR] COG0477 Permeases of the major facilitator superfamily.
       0.773
map
Methionine aminopeptidase, type I; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
       0.773
glnD
protein-P-II uridylyltransferase; Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen metabolism.
       0.773
KB13_1050
[S] COG3496 Uncharacterized conserved protein.
 
     0.722
cfa
[M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases.
       0.573
rpsB
[J] COG0052 Ribosomal protein S2; Belongs to the universal ribosomal protein uS2 family.
       0.534
KB13_732
Conserved hypothetical protein, putative; [S] COG3752 Predicted membrane protein.
 
     0.529
KB13_1035
[M] COG2230 Cyclopropane fatty acid synthase and related methyltransferases.
 
     0.490
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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