STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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Textmining
[Homology]
Score
KB13_251O-linked GlcNAc transferase, putative; [R] COG0457 FOG: TPR repeat. (245 aa)    
Predicted Functional Partners:
KB13_55
[BQ] COG0123 Deacetylases, including yeast histone deacetylase and acetoin utilization protein.
 
 
  0.938
cyaK
[T] COG2114 Adenylate cyclase, family 3 (some proteins contain HAMP domain).
 
 
  0.837
KB13_1061
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, putative; [R] COG0457 FOG: TPR repeat.
 
 
  0.799
KB13_207
[T] COG3850 Signal transduction histidine kinase, nitrate/nitrite-specific.
  
  
 0.775
KB13_260
2OG-Fe(II) oxygenase family enzyme.
       0.773
KB13_959
[KR] COG0454 Histone acetyltransferase HPA2 and related acetyltransferases.
       0.773
ribB
Riboflavin biosynthesis protein ribAB; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
     
  0.770
htpG
Chaperone protein HtpG; Molecular chaperone. Has ATPase activity.
   
  0.713
dnaJ
Chaperone protein DnaJ; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, D [...]
    
  0.710
KB13_230
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
  
     0.697
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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