STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
KB13_259Hydrolase, alpha/beta fold family, putative; [R] COG0596 Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily). (277 aa)    
Predicted Functional Partners:
oadA
[I] COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit.
    
 0.866
lpdA
[C] COG1249 Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes.
    
 0.859
KB13_1255
Retinol dehydrogenase 11; [IQR] COG1028 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases); Belongs to the short-chain dehydrogenases/reductases (SDR) family.
   
  0.830
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
   
  0.810
KB13_1198
P-protein; [E] COG1605 Chorismate mutase.
     
 0.801
apaH
Bis(5-nucleosyl)-tetraphosphatase; [T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
    
  0.773
KB13_777
Oxidoreductase, FAD-binding; [C] COG0247 Fe-S oxidoreductase.
     
 0.755
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
   
 0.754
KB13_1230
Hypothetical protein; [K] COG1846 Transcriptional regulators.
       0.551
KB13_422
[R] COG0666 FOG: Ankyrin repeat.
   
  0.545
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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