STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_263Conserved hypothetical protein; [M] COG3203 Outer membrane protein (porin). (420 aa)    
Predicted Functional Partners:
KB13_23
VacJ family lipoprotein; [M] COG2853 Surface lipoprotein.
    
   0.798
KB13_309
Conserved hypothetical protein.
  
     0.704
KB13_230
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
       0.570
KB13_233
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
     0.565
KB13_1287
[P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
  
   
 0.564
KB13_1190
Lipopolysaccharide kinase (Kdo/WaaP) family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.557
KB13_186
Putative TonB-dependent receptor; [P] COG1629 Outer membrane receptor proteins, mostly Fe transport.
    
 
 0.537
ttg2D
Toluene tolerance protein Ttg2D; [Q] COG2854 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
  
 
   0.532
KB13_1037
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
     0.477
KB13_38
Methanol dehydrogenase subunit 1; [S] COG1520 FOG: WD40-like repeat.
  
    0.464
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
Server load: medium (68%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.