Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KB13_360[R] COG0795 Predicted permeases; overlaps another CDS with the same product name. (368 aa)    
Predicted Functional Partners:
KB13_948
[R] COG0795 Predicted permeases; overlaps another CDS with the same product name.
 0.999
KB13_466
ABC transporter, ATPase subunit; [E] COG0411 ABC-type branched-chain amino acid transport systems, ATPase component.
   
 0.986
KB13_431
[S] COG3117 Uncharacterized protein conserved in bacteria.
 
 
 0.912
lptD
Organic solvent tolerance protein; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
 
 0.855
KB13_931
Hypothetical protein; [G] COG2956 Predicted N-acetylglucosaminyl transferase; tetratricopeptide region.
  
     0.645
pepA_2
Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.622
KB13_1110
Hypothetical protein.
       0.605
KB13_19
Glycosyl transferase, family 39, putative; [M] COG1807 4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family.
 
     0.605
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
 
     0.601
bamE
SmpA/OmlA; Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane.
  
     0.557
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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