STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_362Hypothetical protein; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain. (328 aa)    
Predicted Functional Partners:
KB13_965
Hypothetical protein.
       0.773
KB13_1241
[R] COG0457 FOG: TPR repeat.
 
 0.757
KB13_809
MaoC domain protein; [I] COG2030 Acyl dehydratase.
    
  0.712
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 
  0.655
KB13_695
[F] COG0209 Ribonucleotide reductase, alpha subunit.
  
    0.591
KB13_510
Ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent; Catalyzes the reduction of ribonucleotides to deoxyribonucleotides. May function to provide a pool of deoxyribonucleotide precursors for DNA repair during oxygen limitation and/or for immediate growth after restoration of oxygen.
  
    0.585
KB13_816
Hypothetical protein.
       0.572
KB13_393
Carboxymethylenebutenolidase; [Q] COG0412 Dienelactone hydrolase and related enzymes.
       0.564
thiS
[H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis.
       0.546
apaG
ApaG protein; [P] COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport.
       0.546
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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