Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KB13_366NAD-dependent epimerase/dehydratase; [M] COG1087 UDP-glucose 4-epimerase. (312 aa)    
Predicted Functional Partners:
KB13_1242
Mannose-1-phosphate guanyltransferase, putative; [M] COG1209 dTDP-glucose pyrophosphorylase.
 
 0.931
KB13_1186
[C] COG1032 Fe-S oxidoreductase.
 
  
  0.912
KB13_770
Ghmp kinase; [I] COG1577 Mevalonate kinase.
 
    0.909
KB13_652
DegT/DnrJ/EryC1/StrS aminotransferase; [M] COG0399 Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
 
  0.861
gltB
Glutamate synthase, large subunit; [E] COG0070 Glutamate synthase domain 3.
    
  0.803
KB13_1023
Teichoic acids export ATP-binding protein TagH; [V] COG1131 ABC-type multidrug transport system, ATPase component.
  
    0.783
galE
UDP-glucose 4-epimerase; [MG] COG0451 Nucleoside-diphosphate-sugar epimerases.
 
  
  0.778
KB13_471
[GM] COG1682 ABC-type polysaccharide/polyol phosphate export systems, permease component.
  
    0.774
KB13_486
Hypothetical protein.
       0.773
fcl
GDP-L-fucose synthase 1; Catalyzes the two-step NADP-dependent conversion of GDP-4- dehydro-6-deoxy-D-mannose to GDP-fucose, involving an epimerase and a reductase reaction.
 
  
  0.751
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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