STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mpgSPMannosyl-3-phosphoglycerate synthase/mannosyl-3-phosphoglycerate phosphatase; [R] COG0561 Predicted hydrolases of the HAD superfamily. (249 aa)    
Predicted Functional Partners:
KB13_1221
Sucrose phosphorylase; [G] COG0366 Glycosidases.
 
     0.951
KB13_966
[M] COG0463 Glycosyltransferases involved in cell wall biogenesis.
 
     0.951
KB13_842
[C] COG3038 Cytochrome B561.
       0.661
KB13_604
Radical SAM domain protein; [C] COG0731 Fe-S oxidoreductases.
       0.631
KB13_389
Acetate permease; [ER] COG0591 Na+/proline symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
       0.551
KB13_65
Conserved hypothetical protein; [S] COG3162 Predicted membrane protein.
       0.551
KB13_324
Metallo-beta-lactamase family protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
       0.455
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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