STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_38Methanol dehydrogenase subunit 1; [S] COG1520 FOG: WD40-like repeat. (625 aa)    
Predicted Functional Partners:
KB13_696
MxaD.
  
  
  0.896
KB13_322
Von Willebrand factor, type A; [R] COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
  
  0.884
KB13_1076
Von Willebrand factor, type A.
  
  
  0.882
KB13_1239
Hypothetical protein; [S] COG3391 Uncharacterized conserved protein; WD-40 repeat.
 
 
  0.848
KB13_1162
Hypothetical protein; [S] COG3391 Uncharacterized conserved protein; 40-residue yvtn beta-propeller repeat.
  
 
  0.838
KB13_888
Sulphur oxidation protein SoxZ; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
 
  
  0.817
KB13_377
Cytochrome c, class I.
  
 
 0.813
KB13_964
Putative Cytochrome c subfamily protein.
  
 
 0.810
pqqC
Coenzyme PQQ biosynthesis protein C; Ring cyclization and eight-electron oxidation of 3a-(2-amino- 2-carboxyethyl)-4,5-dioxo-4,5,6,7,8,9-hexahydroquinoline-7,9- dicarboxylic-acid to PQQ.
 
  
 0.793
KB13_324
Metallo-beta-lactamase family protein; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
 
   
 0.783
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.