STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_387STAS domain protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit. (222 aa)    
Predicted Functional Partners:
KB13_1253
Stage II sporulation protein E; [TK] COG2208 Serine phosphatase RsbU, regulator of sigma subunit.
  
 0.999
KB13_1084
ABC transporter, ATP-binding protein; [G] COG3839 ABC-type sugar transport systems, ATPase components.
   
  0.928
KB13_1068
[Q] COG0767 ABC-type transport system involved in resistance to organic solvents, permease component.
   
 0.917
KB13_187
ABC transporter, periplasmic substrate-binding protein; [Q] COG1463 ABC-type transport system involved in resistance to organic solvents, periplasmic component.
  
  0.911
pilT
Type II Secretion PilT; [R] COG0491 Zn-dependent hydrolases, including glyoxylases.
     
 0.747
KB13_343
Prepilin-type N-terminal cleavage/methylation domain protein; [NU] COG4969 Tfp pilus assembly protein, major pilin PilA.
       0.746
KB13_1091
Ferritin and Dps; [P] COG2193 Bacterioferritin (cytochrome b1).
   
  
 0.705
KB13_128
Fimbrial assembly protein.
     
 0.704
pilC
Type II Secretion System PilC; [NU] COG1459 Type II secretory pathway, component PulF.
     
 0.688
KB13_110
Hypothetical protein.
       0.681
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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