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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_393Carboxymethylenebutenolidase; [Q] COG0412 Dienelactone hydrolase and related enzymes. (246 aa)    
Predicted Functional Partners:
thiS
[H] COG2104 Sulfur transfer protein involved in thiamine biosynthesis.
       0.769
KB13_816
Hypothetical protein.
       0.762
apaG
ApaG protein; [P] COG2967 Uncharacterized protein affecting Mg2+/Co2+ transport.
       0.746
thiG
Thiazole biosynthesis protein ThiG; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S.
       0.746
KB13_942
MltA; [M] COG2821 Membrane-bound lytic murein transglycosylase.
       0.746
KB13_856
Peptidase M48, Ste24p; [O] COG0501 Zn-dependent protease with chaperone function.
 
      0.642
KB13_362
Hypothetical protein; [O] COG0265 Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain.
       0.564
KB13_965
Hypothetical protein.
       0.564
KB13_392
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
  
 
  0.504
KB13_695
[F] COG0209 Ribonucleotide reductase, alpha subunit.
  
    0.479
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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