STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_420Hypothetical protein; [R] COG0457 FOG: TPR repeat; TPR repeat. (534 aa)    
Predicted Functional Partners:
KB13_309
Conserved hypothetical protein.
  
 
  0.901
KB13_1241
[R] COG0457 FOG: TPR repeat.
0.861
KB13_1061
UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase, putative; [R] COG0457 FOG: TPR repeat.
 
  
  0.837
KB13_751
Lipopolysaccharide kinase (Kdo/WaaP) family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
  0.708
KB13_230
Tetratricopeptide repeat domain protein; [R] COG0457 FOG: TPR repeat.
 
  0.654
KB13_943
Conserved hypothetical protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
       0.556
KB13_322
Von Willebrand factor, type A; [R] COG2304 Uncharacterized protein containing a von Willebrand factor type A (vWA) domain.
  
     0.471
KB13_251
O-linked GlcNAc transferase, putative; [R] COG0457 FOG: TPR repeat.
  
 
0.415
KB13_377
Cytochrome c, class I.
  
     0.411
KB13_964
Putative Cytochrome c subfamily protein.
  
     0.405
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.