STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KB13_422[R] COG0666 FOG: Ankyrin repeat. (311 aa)    
Predicted Functional Partners:
KB13_1241
[R] COG0457 FOG: TPR repeat.
 
 0.980
apaH
Bis(5-nucleosyl)-tetraphosphatase; [T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases.
    
 0.978
KB13_1296
Hypothetical protein.
    
 0.944
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
   
 0.928
KB13_309
Conserved hypothetical protein.
    
 0.910
KB13_751
Lipopolysaccharide kinase (Kdo/WaaP) family protein; [K] COG5665 CCR4-NOT transcriptional regulation complex, NOT5 subunit.
    
 0.910
hrpA
[L] COG1643 HrpA-like helicases.
    
 0.906
KB13_251
O-linked GlcNAc transferase, putative; [R] COG0457 FOG: TPR repeat.
  
 
  0.880
rpsC
Ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.
    
  0.859
KB13_1154
Hypothetical protein; [R] COG0457 FOG: TPR repeat; tetratricopeptide TPR_2.
  
 
  0.855
Your Current Organism:
beta proteobacterium KB13
NCBI taxonomy Id: 314607
Other names: b. proteobacterium KB13
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.